Pausing content (#3061)

* Change EntityQuery to not retrieve paused by default

* GetAllComponents

Co-authored-by: Metal Gear Sloth <metalgearsloth@gmail.com>

Content.Benchmarks/ComponentManagerGetAllComponents.cs

@@ -79,7 +79,7 @@ namespace Content.Benchmarks
         {
             var count = 0;
 
-            foreach (var _ in _componentManager.EntityQuery<DummyComponent>())
+            foreach (var _ in _componentManager.EntityQuery<DummyComponent>(true))
             {
                 count += 1;
             }

Content.Client/Commands/DebugCommands.cs

@@ -52,7 +52,7 @@ namespace Content.Client.Commands
                 .EnableAll = true;
 
             var components = IoCManager.Resolve<IEntityManager>().ComponentManager
-                .EntityQuery<SubFloorHideComponent>();
+                .EntityQuery<SubFloorHideComponent>(true);
 
             foreach (var component in components)
             {

Content.Client/Commands/HideMechanismsCommand.cs

@@ -17,7 +17,7 @@ namespace Content.Client.Commands
         public void Execute(IConsoleShell shell, string argStr, string[] args)
         {
             var componentManager = IoCManager.Resolve<IComponentManager>();
-            var mechanisms = componentManager.EntityQuery<IMechanism>();
+            var mechanisms = componentManager.EntityQuery<IMechanism>(true);
 
             foreach (var mechanism in mechanisms)
             {

Content.Client/Commands/ShowMechanismsCommand.cs

@@ -19,7 +19,7 @@ namespace Content.Client.Commands
         public void Execute(IConsoleShell shell, string argStr, string[] args)
         {
             var componentManager = IoCManager.Resolve<IComponentManager>();
-            var mechanisms = componentManager.EntityQuery<IMechanism>();
+            var mechanisms = componentManager.EntityQuery<IMechanism>(true);
 
             foreach (var mechanism in mechanisms)
             {

Content.Client/GameObjects/Components/Observer/GhostComponent.cs

@@ -46,7 +46,7 @@ namespace Content.Client.GameObjects.Components.Observer
 
         private void SetGhostVisibility(bool visibility)
         {
-            foreach (var ghost in _componentManager.GetAllComponents(typeof(GhostComponent)))
+            foreach (var ghost in _componentManager.GetAllComponents(typeof(GhostComponent), true))
             {
                 if (ghost.Owner.TryGetComponent(out SpriteComponent? component))
                 {

Content.Client/GameObjects/EntitySystems/CameraRecoilSystem.cs

@@ -11,7 +11,7 @@ namespace Content.Client.GameObjects.EntitySystems
         {
             base.FrameUpdate(frameTime);
 
-            foreach (var recoil in EntityManager.ComponentManager.EntityQuery<CameraRecoilComponent>())
+            foreach (var recoil in EntityManager.ComponentManager.EntityQuery<CameraRecoilComponent>(true))
             {
                 recoil.FrameUpdate(frameTime);
             }

Content.Client/GameObjects/EntitySystems/DoAfter/DoAfterSystem.cs

@@ -61,7 +61,7 @@ namespace Content.Client.GameObjects.EntitySystems.DoAfter
             if (_attachedEntity == null || _attachedEntity.Deleted)
                 return;
 
-            foreach (var comp in ComponentManager.EntityQuery<DoAfterComponent>())
+            foreach (var comp in ComponentManager.EntityQuery<DoAfterComponent>(true))
             {
                 if (!_knownComponents.Contains(comp))
                 {

Content.Client/GameObjects/EntitySystems/InstrumentSystem.cs

@@ -44,7 +44,7 @@ namespace Content.Client.GameObjects.EntitySystems
                 return;
             }
 
-            foreach (var instrumentComponent in EntityManager.ComponentManager.EntityQuery<InstrumentComponent>())
+            foreach (var instrumentComponent in EntityManager.ComponentManager.EntityQuery<InstrumentComponent>(true))
             {
                 instrumentComponent.Update(frameTime);
             }

Content.Client/GameObjects/EntitySystems/MarkerSystem.cs

@@ -19,7 +19,7 @@ namespace Content.Client.GameObjects.EntitySystems
 
         private void UpdateMarkers()
         {
-            foreach (var markerComponent in EntityManager.ComponentManager.EntityQuery<MarkerComponent>())
+            foreach (var markerComponent in EntityManager.ComponentManager.EntityQuery<MarkerComponent>(true))
             {
                 markerComponent.UpdateVisibility();
             }

Content.Client/GameObjects/EntitySystems/MeleeLungeSystem.cs

@@ -11,7 +11,7 @@ namespace Content.Client.GameObjects.EntitySystems
         {
             base.FrameUpdate(frameTime);
 
-            foreach (var meleeLungeComponent in EntityManager.ComponentManager.EntityQuery<MeleeLungeComponent>())
+            foreach (var meleeLungeComponent in EntityManager.ComponentManager.EntityQuery<MeleeLungeComponent>(true))
             {
                 meleeLungeComponent.Update(frameTime);
             }

Content.Client/GameObjects/EntitySystems/MeleeWeaponSystem.cs

@@ -34,7 +34,7 @@ namespace Content.Client.GameObjects.EntitySystems
         {
             base.FrameUpdate(frameTime);
 
-            foreach (var arcAnimationComponent in EntityManager.ComponentManager.EntityQuery<MeleeWeaponArcAnimationComponent>())
+            foreach (var arcAnimationComponent in EntityManager.ComponentManager.EntityQuery<MeleeWeaponArcAnimationComponent>(true))
             {
                 arcAnimationComponent.Update(frameTime);
             }

Content.Client/GameObjects/EntitySystems/SubFloorHideSystem.cs

@@ -35,7 +35,7 @@ namespace Content.Client.GameObjects.EntitySystems
 
         private void UpdateAll()
         {
-            foreach (var comp in EntityManager.ComponentManager.EntityQuery<SubFloorHideComponent>())
+            foreach (var comp in EntityManager.ComponentManager.EntityQuery<SubFloorHideComponent>(true))
             {
                 if (!_mapManager.TryGetGrid(comp.Owner.Transform.GridID, out var grid)) return;
 

Content.Client/StationEvents/RadiationPulseOverlay.cs

@@ -124,7 +124,7 @@ namespace Content.Client.StationEvents
             _lastTick = _gameTiming.CurTime;
 
             var radiationPulses = _componentManager
-                .EntityQuery<RadiationPulseComponent>()
+                .EntityQuery<RadiationPulseComponent>(true)
                 .ToList();
 
             var screenHandle = (DrawingHandleScreen) handle;

Content.Server/Administration/Commands/DeleteComponent.cs

@@ -33,7 +33,7 @@ namespace Content.Server.Administration.Commands
                     }
 
                     var componentType = registration.Type;
-                    var components = entityManager.ComponentManager.GetAllComponents(componentType);
+                    var components = entityManager.ComponentManager.GetAllComponents(componentType, true);
 
                     var i = 0;
 

Content.Server/Administration/Commands/WarpCommand.cs

@@ -43,7 +43,7 @@ namespace Content.Server.Administration.Commands
             if (location == "?")
             {
                 var locations = string.Join(", ",
-                    comp.EntityQuery<WarpPointComponent>()
+                    comp.EntityQuery<WarpPointComponent>(true)
                         .Select(p => p.Location)
                         .Where(p => p != null)
                         .OrderBy(p => p)
@@ -64,7 +64,7 @@ namespace Content.Server.Administration.Commands
                 var currentGrid = player.AttachedEntity.Transform.GridID;
                 var entityManager = IoCManager.Resolve<IEntityManager>();
 
-                var found = comp.EntityQuery<WarpPointComponent>()
+                var found = comp.EntityQuery<WarpPointComponent>(true)
                     .Where(p => p.Location == location)
                     .Select(p => p.Owner.Transform.Coordinates)
                     .OrderBy(p => p, Comparer<EntityCoordinates>.Create((a, b) =>

Content.Server/GameObjects/Components/Observer/GhostComponent.cs

@@ -144,7 +144,7 @@ namespace Content.Server.GameObjects.Components.Observer
         private List<WarpPointComponent> FindWaypoints()
         {
             var comp = IoCManager.Resolve<IComponentManager>();
-            return comp.EntityQuery<WarpPointComponent>().ToList();
+            return comp.EntityQuery<WarpPointComponent>(true).ToList();
         }
 
         public void Examine(FormattedMessage message, bool inDetailsRange)

Content.Server/GameObjects/EntitySystems/AI/AiFactionTagSystem.cs

@@ -48,7 +48,7 @@ namespace Content.Server.GameObjects.EntitySystems.AI
                 yield break;
             }
 
-            foreach (var component in ComponentManager.EntityQuery<AiFactionTagComponent>())
+            foreach (var component in ComponentManager.EntityQuery<AiFactionTagComponent>(true))
             {
                 if ((component.Factions & hostile) == 0)
                     continue;

Content.Server/GameObjects/EntitySystems/AntimatterEngineSystem.cs

@@ -15,7 +15,7 @@ namespace Content.Server.GameObjects.EntitySystems
             _accumulatedFrameTime += frameTime;
             if (_accumulatedFrameTime >= 10)
             {
-                foreach (var comp in ComponentManager.EntityQuery<AMEControllerComponent>())
+                foreach (var comp in ComponentManager.EntityQuery<AMEControllerComponent>(true))
                 {
                     comp.OnUpdate(frameTime);
                 }

Content.Server/GameObjects/EntitySystems/AtmosExposedSystem.cs

@@ -21,7 +21,7 @@ namespace Content.Server.GameObjects.EntitySystems
             if (_lastUpdate < UpdateDelay) return;
 
             // creadth: everything exposable by atmos should be updated as well
-            foreach (var atmosExposedComponent in EntityManager.ComponentManager.EntityQuery<AtmosExposedComponent>())
+            foreach (var atmosExposedComponent in EntityManager.ComponentManager.EntityQuery<AtmosExposedComponent>(true))
             {
                 var tile = atmosExposedComponent.Owner.Transform.Coordinates.GetTileAtmosphere(EntityManager);
                 if (tile == null) continue;

Content.Server/GameObjects/EntitySystems/AtmosphereSystem.cs

@@ -143,7 +143,7 @@ namespace Content.Server.GameObjects.EntitySystems
         {
             base.Update(frameTime);
 
-            foreach (var (mapGridComponent, gridAtmosphereComponent) in EntityManager.ComponentManager.EntityQuery<IMapGridComponent, IGridAtmosphereComponent>())
+            foreach (var (mapGridComponent, gridAtmosphereComponent) in EntityManager.ComponentManager.EntityQuery<IMapGridComponent, IGridAtmosphereComponent>(true))
             {
                 if (_pauseManager.IsGridPaused(mapGridComponent.GridIndex)) continue;
 

Content.Server/GameObjects/EntitySystems/BlockGameSystem.cs

@@ -63,7 +63,7 @@ namespace Content.Server.GameObjects.EntitySystems
 
         public override void Update(float frameTime)
         {
-            foreach (var comp in ComponentManager.EntityQuery<BlockGameArcadeComponent>())
+            foreach (var comp in ComponentManager.EntityQuery<BlockGameArcadeComponent>(true))
             {
                 comp.DoGameTick(frameTime);
             }

Content.Server/GameObjects/EntitySystems/CargoConsoleSystem.cs

@@ -180,7 +180,7 @@ namespace Content.Server.GameObjects.EntitySystems
 
         private void SyncComponentsWithId(int id)
         {
-            foreach (var comp in ComponentManager.EntityQuery<CargoOrderDatabaseComponent>())
+            foreach (var comp in ComponentManager.EntityQuery<CargoOrderDatabaseComponent>(true))
             {
                 if (!comp.ConnectedToDatabase || comp.Database.Id != id)
                     continue;

Content.Server/GameObjects/EntitySystems/ClimbSystem.cs

@@ -9,7 +9,7 @@ namespace Content.Server.GameObjects.EntitySystems
     {
         public override void Update(float frameTime)
         {
-            foreach (var comp in ComponentManager.EntityQuery<ClimbingComponent>())
+            foreach (var comp in ComponentManager.EntityQuery<ClimbingComponent>(true))
             {
                 comp.Update();
             }

Content.Server/GameObjects/EntitySystems/CloningSystem.cs

@@ -11,7 +11,7 @@ namespace Content.Server.GameObjects.EntitySystems
     {
         public override void Update(float frameTime)
         {
-            foreach (var comp in ComponentManager.EntityQuery<CloningPodComponent>())
+            foreach (var comp in ComponentManager.EntityQuery<CloningPodComponent>(true))
             {
                 comp.Update(frameTime);
             }
@@ -23,7 +23,7 @@ namespace Content.Server.GameObjects.EntitySystems
         {
             if (!Minds.ContainsValue(mind))
             {
-                Minds.Add(Minds.Count(), mind);
+                Minds.Add(Minds.Count, mind);
             }
         }
 

Content.Server/GameObjects/EntitySystems/ConveyorSystem.cs

@@ -11,7 +11,7 @@ namespace Content.Server.GameObjects.EntitySystems
     {
         public override void Update(float frameTime)
         {
-            foreach (var comp in ComponentManager.EntityQuery<ConveyorComponent>())
+            foreach (var comp in ComponentManager.EntityQuery<ConveyorComponent>(true))
             {
                 comp.Update(frameTime);
             }

Content.Server/GameObjects/EntitySystems/DisposableSystem.cs

@@ -10,7 +10,7 @@ namespace Content.Server.GameObjects.EntitySystems
 
         public override void Update(float frameTime)
         {
-            foreach (var comp in ComponentManager.EntityQuery<DisposalHolderComponent>())
+            foreach (var comp in ComponentManager.EntityQuery<DisposalHolderComponent>(true))
             {
                 comp.Update(frameTime);
             }

Content.Server/GameObjects/EntitySystems/DoAfter/DoAfterSystem.cs

@@ -17,10 +17,8 @@ namespace Content.Server.GameObjects.EntitySystems.DoAfter
         {
             base.Update(frameTime);
 
-            foreach (var comp in ComponentManager.EntityQuery<DoAfterComponent>())
+            foreach (var comp in ComponentManager.EntityQuery<DoAfterComponent>(true))
             {
-                if (comp.Owner.Paused) continue;
-
                 var cancelled = new List<DoAfter>(0);
                 var finished = new List<DoAfter>(0);
 

Content.Server/GameObjects/EntitySystems/ExpendableLightSystem.cs

@@ -9,7 +9,7 @@ namespace Content.Server.GameObjects.EntitySystems
     {
         public override void Update(float frameTime)
         {
-            foreach (var light in ComponentManager.EntityQuery<ExpendableLightComponent>())
+            foreach (var light in ComponentManager.EntityQuery<ExpendableLightComponent>(true))
             {
                 light.Update(frameTime);
             }

Content.Server/GameObjects/EntitySystems/GasAnalyzerSystem.cs

@@ -9,7 +9,7 @@ namespace Content.Server.GameObjects.EntitySystems
     {
         public override void Update(float frameTime)
         {
-            foreach (var analyzer in ComponentManager.EntityQuery<GasAnalyzerComponent>())
+            foreach (var analyzer in ComponentManager.EntityQuery<GasAnalyzerComponent>(true))
             {
                 analyzer.Update(frameTime);
             }

Content.Server/GameObjects/EntitySystems/GasCanisterSystem.cs

@@ -10,7 +10,7 @@ namespace Content.Server.GameObjects.EntitySystems
     {
         public override void Update(float frameTime)
         {
-            foreach (var component in ComponentManager.EntityQuery<GasCanisterComponent>())
+            foreach (var component in ComponentManager.EntityQuery<GasCanisterComponent>(true))
             {
                 component.Update(frameTime);
             }

Content.Server/GameObjects/EntitySystems/GasTankSystem.cs

@@ -23,7 +23,7 @@ namespace Content.Server.GameObjects.EntitySystems
             if (_timer < Interval) return;
             _timer = 0f;
 
-            foreach (var gasTank in EntityManager.ComponentManager.EntityQuery<GasTankComponent>())
+            foreach (var gasTank in EntityManager.ComponentManager.EntityQuery<GasTankComponent>(true))
             {
                 gasTank.Update();
             }

Content.Server/GameObjects/EntitySystems/GravitySystem.cs

@@ -36,7 +36,7 @@ namespace Content.Server.GameObjects.EntitySystems
         {
             _internalTimer += frameTime;
             var gridsWithGravity = new List<GridId>();
-            foreach (var generator in ComponentManager.EntityQuery<GravityGeneratorComponent>())
+            foreach (var generator in ComponentManager.EntityQuery<GravityGeneratorComponent>(true))
             {
                 if (generator.NeedsUpdate)
                 {

Content.Server/GameObjects/EntitySystems/HungerSystem.cs

@@ -15,7 +15,7 @@ namespace Content.Server.GameObjects.EntitySystems
 
             if (_accumulatedFrameTime > 1)
             {
-                foreach (var comp in ComponentManager.EntityQuery<HungerComponent>())
+                foreach (var comp in ComponentManager.EntityQuery<HungerComponent>(true))
                 {
                     comp.OnUpdate(_accumulatedFrameTime);
                 }

Content.Server/GameObjects/EntitySystems/InstrumentSystem.cs

@@ -51,7 +51,7 @@ namespace Content.Server.GameObjects.EntitySystems
         {
             base.Update(frameTime);
 
-            foreach (var component in ComponentManager.EntityQuery<InstrumentComponent>())
+            foreach (var component in ComponentManager.EntityQuery<InstrumentComponent>(true))
             {
                 component.Update(frameTime);
             }

Content.Server/GameObjects/EntitySystems/LatheSystem.cs

@@ -9,7 +9,7 @@ namespace Content.Server.GameObjects.EntitySystems
     {
         public override void Update(float frameTime)
         {
-            foreach (var comp in ComponentManager.EntityQuery<LatheComponent>())
+            foreach (var comp in ComponentManager.EntityQuery<LatheComponent>(true))
             {
                 if (comp.Producing == false && comp.Queue.Count > 0)
                 {

Content.Server/GameObjects/EntitySystems/ListeningSystem.cs

@@ -10,7 +10,7 @@ namespace Content.Server.GameObjects.EntitySystems
     {
         public void PingListeners(IEntity source, string message)
         {
-            foreach (var listener in ComponentManager.EntityQuery<IListen>())
+            foreach (var listener in ComponentManager.EntityQuery<IListen>(true))
             {
                 // TODO: Map Position distance
                 if (listener.CanListen(message, source))

Content.Server/GameObjects/EntitySystems/MedicalScannerSystem.cs

@@ -10,7 +10,7 @@ namespace Content.Server.GameObjects.EntitySystems
 
         public override void Update(float frameTime)
         {
-            foreach (var comp in ComponentManager.EntityQuery<MedicalScannerComponent>())
+            foreach (var comp in ComponentManager.EntityQuery<MedicalScannerComponent>(true))
             {
                 comp.Update(frameTime);
             }

Content.Server/GameObjects/EntitySystems/MetabolismSystem.cs

@@ -11,7 +11,7 @@ namespace Content.Server.GameObjects.EntitySystems
         {
             base.Update(frameTime);
 
-            foreach (var metabolism in ComponentManager.EntityQuery<MetabolismComponent>())
+            foreach (var metabolism in ComponentManager.EntityQuery<MetabolismComponent>(true))
             {
                 metabolism.Update(frameTime);
             }

Content.Server/GameObjects/EntitySystems/MicrowaveSystem.cs

@@ -10,7 +10,7 @@ namespace Content.Server.GameObjects.EntitySystems
         public override void Update(float frameTime)
         {
             base.Update(frameTime);
-            foreach (var comp in ComponentManager.EntityQuery<MicrowaveComponent>())
+            foreach (var comp in ComponentManager.EntityQuery<MicrowaveComponent>(true))
             {
                 comp.OnUpdate();
             }

Content.Server/GameObjects/EntitySystems/MorgueSystem.cs

@@ -16,7 +16,7 @@ namespace Content.Server.GameObjects.EntitySystems
 
             if (_accumulatedFrameTime >= 10)
             {
-                foreach (var morgue in ComponentManager.EntityQuery<MorgueEntityStorageComponent>())
+                foreach (var morgue in ComponentManager.EntityQuery<MorgueEntityStorageComponent>(true))
                 {
                     morgue.Update();
                 }

Content.Server/GameObjects/EntitySystems/PlantSystem.cs

@@ -70,7 +70,7 @@ namespace Content.Server.GameObjects.EntitySystems
 
             _timer = 0f;
 
-            foreach (var plantHolder in _componentManager.EntityQuery<PlantHolderComponent>())
+            foreach (var plantHolder in _componentManager.EntityQuery<PlantHolderComponent>(true))
             {
                 plantHolder.Update();
             }

Content.Server/GameObjects/EntitySystems/PointingSystem.cs

@@ -86,7 +86,7 @@ namespace Content.Server.GameObjects.EntitySystems
             else
             {
                 return pointer.InRangeUnOccluded(coordinates, 15, e => e == pointer);
-            }         
+            }
         }
 
         public bool TryPoint(ICommonSession? session, EntityCoordinates coords, EntityUid uid)
@@ -199,7 +199,7 @@ namespace Content.Server.GameObjects.EntitySystems
 
         public override void Update(float frameTime)
         {
-            foreach (var component in ComponentManager.EntityQuery<PointingArrowComponent>())
+            foreach (var component in ComponentManager.EntityQuery<PointingArrowComponent>(true))
             {
                 component.Update(frameTime);
             }

Content.Server/GameObjects/EntitySystems/Power/BaseChargerSystem.cs

@@ -10,7 +10,7 @@ namespace Content.Server.GameObjects.EntitySystems
     {
         public override void Update(float frameTime)
         {
-            foreach (var comp in ComponentManager.EntityQuery<BaseCharger>())
+            foreach (var comp in ComponentManager.EntityQuery<BaseCharger>(true))
             {
                 comp.OnUpdate(frameTime);
             }

Content.Server/GameObjects/EntitySystems/Power/BatterySystem.cs

@@ -10,7 +10,7 @@ namespace Content.Server.GameObjects.EntitySystems
     {
         public override void Update(float frameTime)
         {
-            foreach (var comp in ComponentManager.EntityQuery<BatteryComponent>())
+            foreach (var comp in ComponentManager.EntityQuery<BatteryComponent>(true))
             {
                 comp.OnUpdate(frameTime);
             }

Content.Server/GameObjects/EntitySystems/Power/PowerSmesSystem.cs

@@ -10,7 +10,7 @@ namespace Content.Server.GameObjects.EntitySystems
     {
         public override void Update(float frameTime)
         {
-            foreach (var comp in ComponentManager.EntityQuery<SmesComponent>())
+            foreach (var comp in ComponentManager.EntityQuery<SmesComponent>(true))
             {
                 comp.OnUpdate();
             }

Content.Server/GameObjects/EntitySystems/Power/PowerSolarControlConsoleSystem.cs

@@ -22,7 +22,7 @@ namespace Content.Server.GameObjects.EntitySystems
             if (_updateTimer >= 1)
             {
                 _updateTimer -= 1;
-                foreach (var component in ComponentManager.EntityQuery<SolarControlConsoleComponent>())
+                foreach (var component in ComponentManager.EntityQuery<SolarControlConsoleComponent>(true))
                 {
                     component.UpdateUIState();
                 }

Content.Server/GameObjects/EntitySystems/Power/PowerSolarSystem.cs

@@ -87,7 +87,7 @@ namespace Content.Server.GameObjects.EntitySystems
 
             TotalPanelPower = 0;
 
-            foreach (var panel in ComponentManager.EntityQuery<SolarPanelComponent>())
+            foreach (var panel in ComponentManager.EntityQuery<SolarPanelComponent>(true))
             {
                 // There's supposed to be rotational logic here, but that implies putting it somewhere.
                 panel.Owner.Transform.WorldRotation = TargetPanelRotation;

Content.Server/GameObjects/EntitySystems/ProjectileSystem.cs

@@ -11,7 +11,7 @@ namespace Content.Server.GameObjects.EntitySystems
         {
             base.Update(frameTime);
 
-            foreach (var component in ComponentManager.EntityQuery<ProjectileComponent>())
+            foreach (var component in ComponentManager.EntityQuery<ProjectileComponent>(true))
             {
                 component.TimeLeft -= frameTime;
 

Content.Server/GameObjects/EntitySystems/PuddleSystem.cs

@@ -28,7 +28,7 @@ namespace Content.Server.GameObjects.EntitySystems
         private void HandleTileChanged(object sender, TileChangedEventArgs eventArgs)
         {
             // If this gets hammered you could probably queue up all the tile changes every tick but I doubt that would ever happen.
-            foreach (var (puddle, snapGrid) in ComponentManager.EntityQuery<PuddleComponent, SnapGridComponent>())
+            foreach (var (puddle, snapGrid) in ComponentManager.EntityQuery<PuddleComponent, SnapGridComponent>(true))
             {
                 // If the tile becomes space then delete it (potentially change by design)
                 if (eventArgs.NewTile.GridIndex == puddle.Owner.Transform.GridID &&

Content.Server/GameObjects/EntitySystems/RadioSystem.cs

@@ -25,7 +25,7 @@ namespace Content.Server.GameObjects.EntitySystems
 
             _messages.Add(message);
 
-            foreach (var radio in ComponentManager.EntityQuery<IRadio>())
+            foreach (var radio in ComponentManager.EntityQuery<IRadio>(true))
             {
                 if (radio.Channels.Contains(channel))
                 {

Content.Server/GameObjects/EntitySystems/ReagentGrinderSystem.cs

@@ -10,7 +10,7 @@ namespace Content.Server.GameObjects.EntitySystems
         public override void Update(float frameTime)
         {
             base.Update(frameTime);
-            foreach (var comp in ComponentManager.EntityQuery<ReagentGrinderComponent>())
+            foreach (var comp in ComponentManager.EntityQuery<ReagentGrinderComponent>(true))
             {
                 comp.OnUpdate();
             }

Content.Server/GameObjects/EntitySystems/RecyclerSystem.cs

@@ -9,7 +9,7 @@ namespace Content.Server.GameObjects.EntitySystems
     {
         public override void Update(float frameTime)
         {
-            foreach (var component in ComponentManager.EntityQuery<RecyclerComponent>())
+            foreach (var component in ComponentManager.EntityQuery<RecyclerComponent>(true))
             {
                 component.Update(frameTime);
             }

Content.Server/GameObjects/EntitySystems/RoguePointingSystem.cs

@@ -9,7 +9,7 @@ namespace Content.Server.GameObjects.EntitySystems
     {
         public override void Update(float frameTime)
         {
-            foreach (var component in ComponentManager.EntityQuery<RoguePointingArrowComponent>())
+            foreach (var component in ComponentManager.EntityQuery<RoguePointingArrowComponent>(true))
             {
                 component.Update(frameTime);
             }

Content.Server/GameObjects/EntitySystems/SingularitySystem.cs

@@ -20,7 +20,7 @@ namespace Content.Server.GameObjects.EntitySystems
             var shouldUpdate = curTimeSingulo >= 1f;
             var shouldPull = curTimePull >= 0.2f;
             if (!shouldUpdate && !shouldPull) return;
-            var singulos = ComponentManager.EntityQuery<SingularityComponent>();
+            var singulos = ComponentManager.EntityQuery<SingularityComponent>(true);
 
             if (curTimeSingulo >= 1f)
             {

Content.Server/GameObjects/EntitySystems/StationEvents/RadiationPulseSystem.cs

@@ -35,7 +35,7 @@ namespace Content.Server.GameObjects.EntitySystems.StationEvents
         {
             base.Update(frameTime);
 
-            foreach (var comp in ComponentManager.EntityQuery<RadiationPulseComponent>())
+            foreach (var comp in ComponentManager.EntityQuery<RadiationPulseComponent>(true))
             {
                 comp.Update(frameTime);
                 var ent = comp.Owner;

Content.Server/GameObjects/EntitySystems/StorageSystem.cs

@@ -23,7 +23,7 @@ namespace Content.Server.GameObjects.EntitySystems
         /// <inheritdoc />
         public override void Update(float frameTime)
         {
-            foreach (var component in ComponentManager.EntityQuery<ServerStorageComponent>())
+            foreach (var component in ComponentManager.EntityQuery<ServerStorageComponent>(true))
             {
                 CheckSubscribedEntities(component);
             }

Content.Server/GameObjects/EntitySystems/StressTestMovementSystem.cs

@@ -13,7 +13,7 @@ namespace Content.Server.GameObjects.EntitySystems
         {
             base.Update(frameTime);
 
-            foreach (var stressTest in ComponentManager.EntityQuery<StressTestMovementComponent>())
+            foreach (var stressTest in ComponentManager.EntityQuery<StressTestMovementComponent>(true))
             {
                 var transform = stressTest.Owner.Transform;
 

Content.Server/GameObjects/EntitySystems/StunSystem.cs

@@ -11,7 +11,7 @@ namespace Content.Server.GameObjects.EntitySystems
         {
             base.Update(frameTime);
 
-            foreach (var component in ComponentManager.EntityQuery<StunnableComponent>())
+            foreach (var component in ComponentManager.EntityQuery<StunnableComponent>(true))
             {
                 component.Update(frameTime);
             }

Content.Server/GameObjects/EntitySystems/ThirstSystem.cs

@@ -15,7 +15,7 @@ namespace Content.Server.GameObjects.EntitySystems
 
             if (_accumulatedFrameTime > 1)
             {
-                foreach (var component in ComponentManager.EntityQuery<ThirstComponent>())
+                foreach (var component in ComponentManager.EntityQuery<ThirstComponent>(true))
                 {
                     component.OnUpdate(_accumulatedFrameTime);
                 }

Content.Server/GameObjects/EntitySystems/VaporSystem.cs

@@ -9,7 +9,7 @@ namespace Content.Server.GameObjects.EntitySystems
     {
         public override void Update(float frameTime)
         {
-            foreach (var vaporComp in ComponentManager.EntityQuery<VaporComponent>())
+            foreach (var vaporComp in ComponentManager.EntityQuery<VaporComponent>(true))
             {
                 vaporComp.Update(frameTime);
             }

Content.Server/Objectives/Conditions/KillRandomPersonCondition.cs

@@ -17,7 +17,7 @@ namespace Content.Server.Objectives.Conditions
         public override IObjectiveCondition GetAssigned(Mind mind)
         {
             var entityMgr = IoCManager.Resolve<IEntityManager>();
-            var allHumans = entityMgr.ComponentManager.EntityQuery<MindComponent>().Where(mc =>
+            var allHumans = entityMgr.ComponentManager.EntityQuery<MindComponent>(true).Where(mc =>
             {
                 var entity = mc.Mind?.OwnedEntity;
                 return (entity?.GetComponentOrNull<IMobStateComponent>()?.IsAlive() ?? false) && mc.Mind != mind;

Content.Server/StationEvents/PowerGridCheck.cs

@@ -43,7 +43,7 @@ namespace Content.Server.StationEvents
         {
             var componentManager = IoCManager.Resolve<IComponentManager>();
 
-            foreach (var component in componentManager.EntityQuery<PowerReceiverComponent>())
+            foreach (var component in componentManager.EntityQuery<PowerReceiverComponent>(true))
             {
                 component.PowerDisabled = true;
                 _powered.Add(component.Owner);

Content.Shared/GameObjects/EntitySystems/MechanismSystem.cs

@@ -12,7 +12,7 @@ namespace Content.Shared.GameObjects.EntitySystems
         {
             base.Update(frameTime);
 
-            foreach (var mechanism in ComponentManager.EntityQuery<IMechanism>())
+            foreach (var mechanism in ComponentManager.EntityQuery<IMechanism>(true))
             {
                 mechanism.Update(frameTime);
             }

Content.Shared/GameObjects/EntitySystems/SharedDisposalUnitSystem.cs

@@ -9,12 +9,12 @@ namespace Content.Shared.GameObjects.EntitySystems
     {
         public override void Update(float frameTime)
         {
-            foreach (var comp in ComponentManager.EntityQuery<SharedDisposalUnitComponent>())
+            foreach (var comp in ComponentManager.EntityQuery<SharedDisposalUnitComponent>(true))
             {
                 comp.Update(frameTime);
             }
 
-            foreach (var comp in ComponentManager.EntityQuery<SharedDisposalMailingUnitComponent>())
+            foreach (var comp in ComponentManager.EntityQuery<SharedDisposalMailingUnitComponent>(true))
             {
                 comp.Update(frameTime);
             }

Content.Shared/GameObjects/EntitySystems/SlipperySystem.cs

@@ -10,7 +10,7 @@ namespace Content.Shared.GameObjects.EntitySystems
         /// <inheritdoc />
         public override void Update(float frameTime)
         {
-            foreach (var slipperyComp in ComponentManager.EntityQuery<SharedSlipperyComponent>())
+            foreach (var slipperyComp in ComponentManager.EntityQuery<SharedSlipperyComponent>(true))
             {
                 slipperyComp.Update();
             }