Pausing content (#3061)

* Change EntityQuery to not retrieve paused by default

* GetAllComponents

Co-authored-by: Metal Gear Sloth <metalgearsloth@gmail.com>

Content.Server/GameObjects/EntitySystems/PlantSystem.cs

@@ -70,7 +70,7 @@ namespace Content.Server.GameObjects.EntitySystems
 
             _timer = 0f;
 
-            foreach (var plantHolder in _componentManager.EntityQuery<PlantHolderComponent>())
+            foreach (var plantHolder in _componentManager.EntityQuery<PlantHolderComponent>(true))
             {
                 plantHolder.Update();
             }