Code cleanup: Dirty(Comp) (#26238)

* Replaced uses of Dirty(Component) with Dirty(Uid, Component)
Modified some systems (notably pulling-related) to use uids.

* Missed a few

* Revert changes to pulling

* No

Content.Server/Instruments/SwappableInstrumentSystem.cs

@@ -35,7 +35,7 @@ public sealed class SwappableInstrumentSystem : EntitySystem
                 Priority = priority,
                 Act = () =>
                 {
-                    _sharedInstrument.SetInstrumentProgram(instrument, entry.Value.Item1, entry.Value.Item2);
+                    _sharedInstrument.SetInstrumentProgram(uid, instrument, entry.Value.Item1, entry.Value.Item2);
                     _popup.PopupEntity(Loc.GetString("swappable-instrument-component-style-set", ("style", entry.Key)),
                         args.User, args.User);
                 }