Code cleanup: Dirty(Comp) (#26238)

* Replaced uses of Dirty(Component) with Dirty(Uid, Component)
Modified some systems (notably pulling-related) to use uids.

* Missed a few

* Revert changes to pulling

* No

Content.Server/Atmos/EntitySystems/AtmosphereSystem.Map.cs

@@ -58,7 +58,7 @@ public partial class AtmosphereSystem
 
         component.Space = space;
         component.Mixture = mixture;
-        Dirty(component);
+        Dirty(uid, component);
     }
 
     public void SetMapGasMixture(EntityUid uid, GasMixture? mixture, MapAtmosphereComponent? component = null)
@@ -67,7 +67,7 @@ public partial class AtmosphereSystem
             return;
 
         component.Mixture = mixture;
-        Dirty(component);
+        Dirty(uid, component);
     }
 
     public void SetMapSpace(EntityUid uid, bool space, MapAtmosphereComponent? component = null)
@@ -76,6 +76,6 @@ public partial class AtmosphereSystem
             return;
 
         component.Space = space;
-        Dirty(component);
+        Dirty(uid, component);
     }
 }